rs108308194 SNP Detail

Summary

• ID
  rs108308194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:82273357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTGTCCTAAT TGACATTGAG TCTTTCTCAT ATGTTCAATT
  CATGTAGACC AAATCAAATA ATATATTAAC ATATATATGT ATATGTGTAT ATATATATAT
  R
  TATATATATA TAATGATCAT ATGCCAATGA AACTGAAAGT ACCTTTAATA TTTTAAGATA
  CTTAATCTTC TAAGAAACAA CAAATGAAAG TTTATAATTT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148747217	ENSMUSSNP6846170	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108308194					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82273357 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	797 bp upstream
Tssr51489	transcription start site region 51489	855 bp upstream
Tssr51490	transcription start site region 51490	838 bp upstream
Tssr51491	transcription start site region 51491	813 bp upstream
Tssr51492	transcription start site region 51492	787 bp upstream
Tssr51493	transcription start site region 51493	770 bp upstream