rs108310196 SNP Detail

Summary

• ID
  rs108310196
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCAGCAT CTCCTGGCTT
  CACGTAGTTT TTTATTAGGA CTTTGTGGTC TTGTGTTTCT GGATGGCTGG GGTGGGGCTA
  AGACGCCTTG ACTTTTAGAA CATGCTGGTA CTTGTCCCCC TGGTCTCAGA CTGACCACAC
  AACCCTTCCC TGGAGAGACA TTTGTCAGCT AGGCTGAGAC TGGGAACTAG GGGCTGCTTT
  K
  AGTGTTTGTG TGCACACAGT TGGCTCTATG AGAGTGATTC TCAATGGCAG GTGGCTGCCT
  GCCTTGCAGT CCCTTGCCAG CTGTGCCCCA GCCCAGGGAT CTTGTGGTAG TAGTTTTTTA
  AACCTCAACT AGTCTGCCAT GATCGGACCA TAAAGGAAGG ACTTAAACTT GGGGTTAGTG
  GAGAGTGAGC ACGATATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144663592	ENSMUSSNP3064814	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108310196					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887289 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	949 bp upstream
Tssr7322	transcription start site region 7322	978 bp upstream
Tssr7323	transcription start site region 7323	1021 bp upstream
Tssr7324	transcription start site region 7324	1070 bp upstream
Tssr7325	transcription start site region 7325	1085 bp upstream
Tssr7326	transcription start site region 7326	1115 bp upstream
Tssr7327	transcription start site region 7327	1144 bp upstream
Tssr7328	transcription start site region 7328	1447 bp upstream
Tssr7329	transcription start site region 7329	1482 bp upstream
Tssr7330	transcription start site region 7330	1496 bp upstream
Tssr12178	transcription start site region 12178	985 bp downstream
Tssr12179	transcription start site region 12179	1028 bp downstream
Tssr12180	transcription start site region 12180	1092 bp downstream
Tssr12181	transcription start site region 12181	1113 bp downstream
Tssr12182	transcription start site region 12182	1156 bp downstream
Tssr12183	transcription start site region 12183	1177 bp downstream