rs108312641 SNP Detail

Summary

• ID
  rs108312641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40159001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGCGGGCC ATAAGCTTGC GTTGATTAAG TCCCTGCCCT
  TTGTACACAC CGCCCGTCGC TACTACCGAT TGGATGGTTT AGTGAGGCCC ACGGCCCTGG
  Y
  GGAGCGCTGA GAAGACGGTC GAACTTGACT ATCTAGAGGA AGTAAAAGTC GTAACAAGGT
  TTCCGTAGGT GAACCTGCGG AAGGATCATT AACGGGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385455	CHEV_17_39985055	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108312641					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40159001 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	within coordinates
Rr526923	regulatory region 526923	1190 bp distal
Tssr144602	transcription start site region 144602	1749 bp downstream
Tssr144603	transcription start site region 144603	1606 bp downstream
Tssr144604	transcription start site region 144604	1585 bp downstream
Tssr144605	transcription start site region 144605	1537 bp downstream
Tssr144606	transcription start site region 144606	1453 bp downstream
Tssr144607	transcription start site region 144607	1352 bp downstream
Tssr144608	transcription start site region 144608	1216 bp downstream
Tssr144609	transcription start site region 144609	1051 bp downstream
Tssr144610	transcription start site region 144610	895 bp downstream
Tssr144611	transcription start site region 144611	772 bp downstream
Tssr144612	transcription start site region 144612	662 bp downstream
Tssr144613	transcription start site region 144613	518 bp downstream
Tssr144614	transcription start site region 144614	496 bp downstream
Tssr144615	transcription start site region 144615	415 bp downstream
Tssr144616	transcription start site region 144616	325 bp downstream
Tssr144617	transcription start site region 144617	298 bp downstream
Tssr144618	transcription start site region 144618	281 bp downstream
Tssr144619	transcription start site region 144619	238 bp downstream
Tssr144620	transcription start site region 144620	215 bp downstream
Tssr144621	transcription start site region 144621	101 bp downstream
Tssr144622	transcription start site region 144622	85 bp downstream
Tssr144623	transcription start site region 144623	55 bp downstream
Tssr144624	transcription start site region 144624	40 bp upstream
Tssr144625	transcription start site region 144625	82 bp upstream
Tssr144626	transcription start site region 144626	99 bp upstream
Tssr144627	transcription start site region 144627	138 bp upstream
Tssr144628	transcription start site region 144628	308 bp upstream
Tssr144629	transcription start site region 144629	339 bp upstream
Tssr144630	transcription start site region 144630	395 bp upstream
Tssr144631	transcription start site region 144631	416 bp upstream
Tssr144632	transcription start site region 144632	588 bp upstream
Tssr144633	transcription start site region 144633	641 bp upstream
Tssr148062	transcription start site region 148062	1569 bp upstream
Tssr148063	transcription start site region 148063	1427 bp upstream
Tssr148064	transcription start site region 148064	1201 bp upstream
Tssr148065	transcription start site region 148065	326 bp upstream
Tssr148066	transcription start site region 148066	249 bp upstream
Tssr148067	transcription start site region 148067	149 bp upstream
Tssr148068	transcription start site region 148068	51 bp upstream
Tssr148069	transcription start site region 148069	116 bp downstream
Tssr148070	transcription start site region 148070	185 bp downstream
Tssr148071	transcription start site region 148071	198 bp downstream
Tssr148072	transcription start site region 148072	527 bp downstream