rs108312816 SNP Detail

Summary

• ID
  rs108312816
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56261558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCGAT GCACCATCCC
  CGACGTGCAC CTGTTCTCCA CGGTGCCCTA CATGCTAAAT GTCACTGCAG TGCACCCAGG
  CGGCGCCAGC AGCAGCCTCC TAGCCTTTGT GGCTGAGCGA ATCAGTGAGT GTCTGTCCTC
  CCTGCCCCTC TCCACCTGCT CCATCCCGTG GCTCCTCCCT GCCGCCGCCC CCCTACCCCC
  R
  CCCACCTCTT GCTTTGTCCC TGCAGCTTCC ATCCTTTGGC TCTGCTCCCG CCTCACAGGC
  TTCCTGTCGA TGCCCCGGGG CCTTTGCATT GCTTCCTTCC TTGGCTTTCC TGGGTCTCTG
  CTCCAATGTT GGCTCCTCAG TGAGGCCTCC CCAAAAGTAT ATCATTAAAC ATAAGCAATA
  GTCACAGTTA AGAGAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss130931808	NCBIM37_NT_039649_chr17_56093981	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108312816					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130931808	NCBIM37_NT_039649_chr17_56093981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56261558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9328	CpG island 9328	1422 bp proximal
Ebi3	Epstein-Barr virus induced gene 3	within coordinates
Gm16712	predicted gene, 16712	213 bp downstream
Rr340009	regulatory region 340009	1357 bp distal
Tssr145247	transcription start site region 145247	1859 bp downstream
Tssr145248	transcription start site region 145248	1833 bp downstream
Tssr145249	transcription start site region 145249	1819 bp downstream
Tssr145250	transcription start site region 145250	1800 bp downstream
Tssr145251	transcription start site region 145251	1776 bp downstream
Tssr145252	transcription start site region 145252	1762 bp downstream
Tssr145253	transcription start site region 145253	1744 bp downstream
Tssr145254	transcription start site region 145254	1720 bp downstream
Tssr145255	transcription start site region 145255	1696 bp downstream
Tssr145256	transcription start site region 145256	652 bp downstream
Tssr145257	transcription start site region 145257	220 bp downstream
Tssr145258	transcription start site region 145258	187 bp downstream