rs108312994 SNP Detail

Summary

• ID
  rs108312994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47015612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGTCCC AAACCGTGGG
  GGATCGGGGA CAGATAAAGG CGGGGAGAAA AAGCAAGGGA GTGAGCCGGG AGTGGAGCAG
  ATCTGGAGGG GGCCGGGGAT AGGAGCAAAG AGGAAGGGAA GAGGGATAGG TGGGGGGAAA
  TCTGTCCGGG CAAAGACGGA GAGCTGTCCC AGCTGCTGCA CGGACTGGGG GTGCTGGCAG
  Y
  CGCGCGGCCC TGGGGCTGGC CGCGGGAGTG CTGCGGGGGG CCGGACCAGA GGGTCAGTCT
  GAGGCTGTCC CGGGCCTGCC TCGGGCCCCT CCCAGAGCTG CGCGCAGGCC CGGCGGCGGA
  GGCGCAAGGG GAAAGGCCAC GCTCACCTTA TCCTTCTTCA GTTTATAGGA CATCTCGGCC
  GGTCCACACC CGGCCCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145701134	ENSMUSSNP1275764	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108312994					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47015612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9240	CpG island 9240	within coordinates
Gm65134	predicted gene, 65134	501 bp upstream
Ppp2r5d	protein phosphatase 2, regulatory subunit B', delta	within coordinates
Rr370260	regulatory region 370260	259 bp upstream
Tssr148375	transcription start site region 148375	216 bp downstream
Tssr148376	transcription start site region 148376	316 bp downstream