rs108314438 SNP Detail

Summary

• ID
  rs108314438
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81253778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAACAGA TGTAAATTGA
  ATTACAGCCT GCCATGGAAC TACCGAGAAA GGAGGGGGTT AATACTGGCC TTCCCCATCT
  TGTTCTTTGG CATAGTCTTC ATTTCTCAAA CATGTCAATT TCCTCCTTCC CATGGCTAGC
  CCAGCTGGGG ACTGCCATCC AAATCTGTCT GTATATGGAA GGACTCCAGC AATTTGGGGG
  K
  GGGGTGGGGT GGGGCAATCG GATACAGTAA TCTTCCTTTG GGAAGTAAAC CTTTTTCTTT
  TCTGTTCCAA CTTGCATCCA AATCTGATTT CTCCTCATGA AGACACTGCA TAATTAATCC
  TGATAGTAGC GTAATACAGG AACAAACTGT AAAAGCTGAC TGTGGAGGCT CAGTTATGGA
  ATGCTCATTT AGGCAGGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss131264389	NCBIM37_NT_039649_chr17_81345689	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs108314438					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131264389	NCBIM37_NT_039649_chr17_81345689	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81253778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9543	CpG island 9543	1101 bp distal
D17Mit258	DNA segment, Chr 17, Massachusetts Institute of Technology 258	215 bp proximal
Gm65830	predicted gene, 65830	1200 bp upstream
Tmem178	transmembrane protein 178	within coordinates
Tssr145975	transcription start site region 145975	1705 bp downstream
Tssr145976	transcription start site region 145976	1678 bp downstream