rs108318530 SNP Detail

Summary

• ID
  rs108318530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GTGATGGTGG GGGTGGGGCA
  R
  TGCCCCTCCC TGGGAAGCCA TGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324175503	CHEV_12_114669036	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108318530					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss138742445	ENSMUSSNP5510116	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394445 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	287 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	992 bp upstream
Ighj2	immunoglobulin heavy joining 2	1310 bp upstream
Ighj3	immunoglobulin heavy joining 3	1693 bp upstream
Tssr115504	transcription start site region 115504	585 bp downstream
Tssr118011	transcription start site region 118011	1927 bp upstream
Tssr118012	transcription start site region 118012	1692 bp upstream
Tssr118013	transcription start site region 118013	1677 bp upstream
Tssr118014	transcription start site region 118014	1573 bp upstream
Tssr118015	transcription start site region 118015	1477 bp upstream
Tssr118016	transcription start site region 118016	1323 bp upstream
Tssr118017	transcription start site region 118017	983 bp upstream
Tssr118018	transcription start site region 118018	440 bp upstream
Tssr118019	transcription start site region 118019	384 bp upstream
Tssr118020	transcription start site region 118020	339 bp upstream
Tssr118021	transcription start site region 118021	222 bp upstream
Tssr118022	transcription start site region 118022	193 bp upstream
Tssr118023	transcription start site region 118023	30 bp upstream