rs108320193 SNP Detail

Summary

• ID
  rs108320193
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACACTGG TCTTGGAACC
  CCTTCCAAGA GTTCTCACAT CTGGACTGTT TCTAAGGCTT TCGAGTGAAA GAAGAGATGG
  AATGGTGGTT GGTAGCTGCT GGTGCTGGGC TGATTTTTTT CTTCTAAAAC TAGAGTTTCA
  AACTCATCTG AGACCTAAGT GTTTGGTATC TTTTGTTCTT TCCGCATCAC AACCGCCCTG
  T
  TGTGAATATT TTGTTCATCC ATACGAAAAA GTTCGTTGGC TTTTATCAAC AAGAACGAAT
  CTTTACAATA ATAATAATAA TAAAAATAAT AATAAAAAAC AAAAAAAACG AGAGAACCGA
  AAGGGTAGGG GCGGGGCCCC TTCCGGCAGA GTTCGAGTCC AAGTGCTCGG AGGGGCCTCC
  AAGTCTGCCG CAGTGTCGCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131326210	NCBIM37_NT_039649_chr17_84584833	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108320193					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131326210	NCBIM37_NT_039649_chr17_84584833	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	105 bp proximal
Rr1582	regulatory region 1582	1693 bp downstream
Rr340271	regulatory region 340271	within coordinates
Tssr146043	transcription start site region 146043	1721 bp downstream
Tssr146044	transcription start site region 146044	253 bp upstream
Tssr146045	transcription start site region 146045	1597 bp upstream
Tssr149649	transcription start site region 149649	1901 bp upstream
Tssr149650	transcription start site region 149650	71 bp downstream
Tssr149651	transcription start site region 149651	109 bp downstream
Tssr149652	transcription start site region 149652	494 bp downstream
Tssr149653	transcription start site region 149653	542 bp downstream
Tssr149654	transcription start site region 149654	682 bp downstream
Tssr149655	transcription start site region 149655	778 bp downstream
Tssr149656	transcription start site region 149656	868 bp downstream
Tssr149657	transcription start site region 149657	1084 bp downstream
Tssr149658	transcription start site region 149658	1141 bp downstream
Tssr149659	transcription start site region 149659	1176 bp downstream
Tssr149660	transcription start site region 149660	1207 bp downstream
Tssr149661	transcription start site region 149661	1256 bp downstream
Tssr149662	transcription start site region 149662	1315 bp downstream
Tssr149663	transcription start site region 149663	1379 bp downstream
Tssr149664	transcription start site region 149664	1420 bp downstream
Tssr149665	transcription start site region 149665	1465 bp downstream
Tssr149666	transcription start site region 149666	1534 bp downstream
Tssr149667	transcription start site region 149667	1623 bp downstream
Tssr149668	transcription start site region 149668	1678 bp downstream
Tssr149669	transcription start site region 149669	1711 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates