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rs108320193 SNP Detail
Summary
  • ID
    rs108320193
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr17:84492921 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCACACTGG TCTTGGAACC
    CCTTCCAAGA GTTCTCACAT CTGGACTGTT TCTAAGGCTT TCGAGTGAAA GAAGAGATGG
    AATGGTGGTT GGTAGCTGCT GGTGCTGGGC TGATTTTTTT CTTCTAAAAC TAGAGTTTCA
    AACTCATCTG AGACCTAAGT GTTTGGTATC TTTTGTTCTT TCCGCATCAC AACCGCCCTG
    T
    TGTGAATATT TTGTTCATCC ATACGAAAAA GTTCGTTGGC TTTTATCAAC AAGAACGAAT
    CTTTACAATA ATAATAATAA TAAAAATAAT AATAAAAAAC AAAAAAAACG AGAGAACCGA
    AAGGGTAGGG GCGGGGCCCC TTCCGGCAGA GTTCGAGTCC AAGTGCTCGG AGGGGCCTCC
    AAGTCTGCCG CAGTGTCGCC                                            
    
    T = T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss131326210 NCBIM37_NT_039649_chr17_84584833 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs108320193 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss131326210 NCBIM37_NT_039649_chr17_84584833 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84492921 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 105 bp proximal
Rr1582 regulatory region 1582 1693 bp downstream
Rr340271 regulatory region 340271 within coordinates
Tssr146043 transcription start site region 146043 1721 bp downstream
Tssr146044 transcription start site region 146044 253 bp upstream
Tssr146045 transcription start site region 146045 1597 bp upstream
Tssr149649 transcription start site region 149649 1901 bp upstream
Tssr149650 transcription start site region 149650 71 bp downstream
Tssr149651 transcription start site region 149651 109 bp downstream
Tssr149652 transcription start site region 149652 494 bp downstream
Tssr149653 transcription start site region 149653 542 bp downstream
Tssr149654 transcription start site region 149654 682 bp downstream
Tssr149655 transcription start site region 149655 778 bp downstream
Tssr149656 transcription start site region 149656 868 bp downstream
Tssr149657 transcription start site region 149657 1084 bp downstream
Tssr149658 transcription start site region 149658 1141 bp downstream
Tssr149659 transcription start site region 149659 1176 bp downstream
Tssr149660 transcription start site region 149660 1207 bp downstream
Tssr149661 transcription start site region 149661 1256 bp downstream
Tssr149662 transcription start site region 149662 1315 bp downstream
Tssr149663 transcription start site region 149663 1379 bp downstream
Tssr149664 transcription start site region 149664 1420 bp downstream
Tssr149665 transcription start site region 149665 1465 bp downstream
Tssr149666 transcription start site region 149666 1534 bp downstream
Tssr149667 transcription start site region 149667 1623 bp downstream
Tssr149668 transcription start site region 149668 1678 bp downstream
Tssr149669 transcription start site region 149669 1711 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory