rs108321469 SNP Detail

Summary

• ID
  rs108321469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAAAAT CATTTTCCTG
  TGACCCTTCA CATTTACAGA ATTGGGAGGT GCTATTTGAG CAGAATTATA ATTTAATAAG
  TGCAGAGACA GAGTTCTGTT TATCTTTGGG TATCTATCTT CTTAGGAAAC AAATAACAAC
  AGCCAGAGTC CTGGAGAGAT GGCTCAGCAG TCAAGAGTAC TTGTTCTTGC AGAAGATCCA
  M
  GTTCCATTCC CAGAATCTAC TCGGTGACGT ATAACACTCA TAACTCCAGT TCTAGGGGAG
  ACAATGCCCT CTTTTGACTT CCTCATGCAC CAAATACACA GGTATGCACA GACATATATG
  GGAACAAAAG GTTCATGCAC ATAAATAAAT CTAAAAAAAA TTAAGGTTCA GCAAACTAGC
  TAGCTTTTTG TTTCTGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647264	ENSMUSSNP4533344	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss322398754	CHEV_7_117910412	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108321469					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366105 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1308 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	within coordinates
Cpgi19579	CpG island 19579	1185 bp proximal
Rr653308	regulatory region 653308	895 bp proximal
Rr653309	regulatory region 653309	1523 bp proximal
Tssr68503	transcription start site region 68503	1165 bp upstream
Tssr68504	transcription start site region 68504	1208 bp upstream
Tssr68505	transcription start site region 68505	1240 bp upstream
Tssr68506	transcription start site region 68506	1271 bp upstream
Tssr68507	transcription start site region 68507	1717 bp upstream
Tssr68508	transcription start site region 68508	1932 bp upstream