rs108325205 SNP Detail

Summary

• ID
  rs108325205
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189136291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT GGCAAACGCT TCTGGAACAC
  M
  AGTCACTCTG GTAACCTAAG GGGCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146486004	ENSMUSSNP1580987	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320190818	CHEV_1_191227973	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108325205					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189136291 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	1821 bp upstream
Rr372626	regulatory region 372626	1519 bp upstream
Rr425790	regulatory region 425790	1386 bp distal
Rr425791	regulatory region 425791	635 bp distal
Rr425792	regulatory region 425792	1093 bp proximal
Tssr15714	transcription start site region 15714	1333 bp upstream
Tssr15715	transcription start site region 15715	1324 bp upstream