rs108326157 SNP Detail

Summary

• ID
  rs108326157
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6156921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCCCGCTG ACAAGCTCGC CTGTCACTCC GCAGGAGGTG
  AGTGGTCCAG GCTAGGCTAG GCGCCCTGGA GTCTCCGGCG TCGAGCGGCG GGTGGGGGGC
  Y
  CGAGACCGCA CCCCGCGCCC GCGCCCGAGC CCGCGCCCGA GCCCGCGCCC GAGCCCGCGC
  CCCAGCCCGC GCGAGCCCGG GGCAGCACCA CCCGCCGCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss397548395	MGP_WTSI_17_6106646	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	T	C	C	T	T	C	T	T	T	T	T	T	T	C	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108326157					SNP	T	T	T	C	C	T	C	C	T	T	C	T	T	T	T	T	T	T	C	T	C	T	C	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397548395	MGP_WTSI_17_6106646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6156921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	within coordinates
Gm65964	predicted gene, 65964	276 bp upstream
Rr405018	regulatory region 405018	70 bp upstream
Tssr4988	transcription start site region 4988	624 bp upstream
Tssr142458	transcription start site region 142458	164 bp downstream
Tssr142459	transcription start site region 142459	83 bp downstream
Tssr142460	transcription start site region 142460	46 bp downstream
Tssr142461	transcription start site region 142461	29 bp downstream
Tssr142462	transcription start site region 142462	162 bp upstream
Tssr142463	transcription start site region 142463	178 bp upstream
Tssr142464	transcription start site region 142464	204 bp upstream
Tssr142465	transcription start site region 142465	234 bp upstream
Tssr142466	transcription start site region 142466	262 bp upstream
Tssr142467	transcription start site region 142467	488 bp upstream
Tssr146313	transcription start site region 146313	339 bp upstream
Tssr146314	transcription start site region 146314	158 bp upstream
Tssr146315	transcription start site region 146315	107 bp upstream
Tulp4	TUB like protein 4	within coordinates