rs108327725 SNP Detail

Summary

• ID
  rs108327725
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCACTAG TTCTGACACT
  TCCACTTTTC ATAAATAAAT AGTTCAAAAT GGCAGAAGTA CAGTGAGGGC CATTTTGGAA
  ATTTCTGTAA ATCCTGTTCT AGTCTCAGGC CAAATATTCT TCCTTTAATA CCTTTTAATA
  ATATAACTGA AATCAGCAGC TCAGGCAACA ACTTTAAAAG TCAAAATTCT AACATAATAC
  W
  GACTAACAAT GTACTAACTT GATACTCACA TGCTGAAAAC AGTAAAAAAA AAAATACTAA
  ATTGCGTTTG AAAATGAACA GGGAACTTTG TACACTACAT GCAGAGAACA CAGGAGCCTT
  GAATCTGAGC TGTTCCAGGC AGGGTTTGTT GCTGTCCCAT GGTGTGACAT AATGCTGCAT
  GTGAAATACA CGCATGTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245705	ENSMUSSNP6900087	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108327725					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876667 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1096 bp downstream
Rr562815	regulatory region 562815	476 bp distal
Rr562816	regulatory region 562816	19 bp proximal
Tssr600	transcription start site region 600	1376 bp downstream
Tssr601	transcription start site region 601	1386 bp downstream
Tssr19429	transcription start site region 19429	1098 bp upstream
Tssr19430	transcription start site region 19430	1193 bp upstream
Tssr19431	transcription start site region 19431	1273 bp upstream
Tssr19432	transcription start site region 19432	1369 bp upstream
Tssr19433	transcription start site region 19433	1935 bp upstream
Tssr19434	transcription start site region 19434	1988 bp upstream
Tssr25660	transcription start site region 25660	1125 bp downstream
Tssr25661	transcription start site region 25661	1142 bp downstream
Tssr25662	transcription start site region 25662	1199 bp downstream
Tssr25663	transcription start site region 25663	1262 bp downstream
Tssr25664	transcription start site region 25664	1292 bp downstream
Tssr25665	transcription start site region 25665	1400 bp downstream
Tssr25666	transcription start site region 25666	1967 bp downstream
Tssr25667	transcription start site region 25667	1994 bp downstream