rs108330289 SNP Detail

Summary

• ID
  rs108330289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84568598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGGTGGTG GGGCTAGACC ACAGAAAAGC AAAGATGGAG
  TGAAATTCTG GTCTCAGATA TCAGGGCCCC AGAGTCTGAG GGTAGTTTAT CCACCCCCCA
  Y
  TCTTGGTTTA AAAAAAATAA AGGATCGGAT GGGGCCAATA GAAGGAAAAC CAAACCCTAG
  ACCCTGGGAA TCAGTGACAG GGGTTTCCAT TTCACTCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146834275	ENSMUSSNP4360188	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320371976	CHEV_2_84578411	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108330289					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84568598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11864	CpG island 11864	1294 bp distal
Rr560318	regulatory region 560318	262 bp proximal
Rr560319	regulatory region 560319	491 bp proximal
Tssr18678	transcription start site region 18678	116 bp downstream
Ypel4	yippee like 4	mRNA-UTR