rs108331024 SNP Detail

Summary

• ID
  rs108331024
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141152416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGTCTCT GAGCCAGTTG
  GATGCCCAGG TTTGTCTCTG AAGCCAGCGC TGCCTCAGCG GCTCTCAGAC TCTCCCCTCT
  GTGTACTGGG GACACTTCCC CCCCATTCCA CCTCTCCTGA GCCACATGCC CTGCTTCGCC
  CTAACTGCAG ATGGTGGCCA CAAGAAGAAC CCCAAACCAG ATCTCTTCTG GCCCCCAAAT
  Y
  CAGGGCAAAA ACCCTTGTCA GCCTTAACCC TGGGGGACCT GGGCTCTGAC TCAGTCTCTG
  CGTGTAGAAT CGGGTGTAAA GGGGGAAGCT CACTGCTAAT CGGGGTCCCA GGGGCCTCTA
  CAGTCTTAGG ACCCTGTGGA GGAGGGGGTG GGGTGGGGTC GTGGGAGTCT AGTCTATAAC
  CTGTACACAA TAAAAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736214	ENSMUSSNP3504132	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108331024					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141152416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	731 bp proximal
Gm70191	predicted gene, 70191	within coordinates
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	within coordinates
Rr603760	regulatory region 603760	198 bp proximal
Rr603761	regulatory region 603761	1189 bp proximal
Rr603762	regulatory region 603762	1699 bp proximal
Tssr40063	transcription start site region 40063	1096 bp downstream
Tssr40064	transcription start site region 40064	1035 bp downstream
Tssr40065	transcription start site region 40065	1008 bp downstream
Tssr40066	transcription start site region 40066	904 bp downstream
Tssr40067	transcription start site region 40067	850 bp downstream
Tssr40068	transcription start site region 40068	795 bp downstream
Tssr40069	transcription start site region 40069	668 bp downstream
Tssr40070	transcription start site region 40070	574 bp downstream
Tssr40071	transcription start site region 40071	557 bp downstream
Tssr40072	transcription start site region 40072	512 bp downstream
Tssr40073	transcription start site region 40073	487 bp downstream
Tssr40074	transcription start site region 40074	460 bp downstream
Tssr40075	transcription start site region 40075	436 bp downstream
Tssr40076	transcription start site region 40076	420 bp downstream
Tssr40077	transcription start site region 40077	400 bp downstream
Tssr40078	transcription start site region 40078	1304 bp upstream
Tssr44315	transcription start site region 44315	1031 bp upstream
Tssr44316	transcription start site region 44316	933 bp upstream
Tssr44317	transcription start site region 44317	905 bp upstream
Tssr44318	transcription start site region 44318	505 bp upstream
Tssr44319	transcription start site region 44319	463 bp downstream