rs108331276 SNP Detail

Summary

• ID
  rs108331276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47868902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAGACA TCTGGGGATC
  ACACCAAGCT CAAGTCCAGA ACTCACATTA GTAACCACGA CTCTGTTCTG TGTCCATGGT
  AATTCTAATT ATCATCCATT CACCCATCCA TCCTTCCATT CATCCATCCA TTCTTAAATC
  CACCCATCCA TACTTCCATC CTTCCATCTA CCATCCATCC ATTGTTCCAT TCATTTGTCT
  R
  TCCATCCATC CATCCATCCA TCCATCCATC CATCCATCCA TCCATTCATT TGTCCATCCA
  TCCATCCATC ATCCTTCCAT CTACCCATCC ATCCATTGTT CCATTCATTT GTCCATCCAT
  CCATCATCCT TCCTTCCATT CATTTGCCCA TCCATCCATT CATCCACCCA CTCATCCATC
  CATCCATCCA TCCATCCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss130872260	NCBIM37_NT_039649_chr17_47694926	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108331276					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130872260	NCBIM37_NT_039649_chr17_47694926	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47868902 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3	cyclin D3	within coordinates
Rr335192	regulatory region 335192	1902 bp distal
Rr335193	regulatory region 335193	102 bp distal
Rr341904	regulatory region 341904	1100 bp proximal
Tssr144956	transcription start site region 144956	452 bp downstream
Tssr144957	transcription start site region 144957	357 bp downstream
Tssr144958	transcription start site region 144958	268 bp downstream
Tssr144959	transcription start site region 144959	251 bp downstream
Tssr144960	transcription start site region 144960	151 bp downstream
Tssr144961	transcription start site region 144961	138 bp downstream
Tssr144962	transcription start site region 144962	112 bp downstream
Tssr144963	transcription start site region 144963	51 bp downstream
Tssr144964	transcription start site region 144964	428 bp upstream