rs108331371 SNP Detail

Summary

• ID
  rs108331371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137353655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAAAGGAG TATACGATAT CCATAATTTT AGAGTATCAA
  TGCTATATAC AAATTCTGAA TAGCCGTGCA TGTGCATGCC TGCCTCCGCG CGCGCGCGCG
  Y
  GCGTGCGTGC GTGCGTGCGT GCGTGCGTGC GTGCGTGTGT GTGTATGCTT ACAGGGAAAG
  CACTCATCCA GTAAGACATC TCCCCAGCCC TCCCTGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145568640	ENSMUSSNP177727	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108331371					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137353655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi822	CpG island 822	within coordinates
Gm70880	predicted gene, 70880	within coordinates
Rr19496	regulatory region 19496	1746 bp proximal