rs108341123 SNP Detail

Summary

• ID
  rs108341123
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172029352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAATTCCCA GCACCCACAT GGCAGTTCAC ACCTGTCAGT
  TTCAGAGGAT TCGACACCTT CACACAGACA TATATATGCA GGCAAAACAC CAATGTTGTT
  K
  TTTTTTTTTT TAAGCCTTTA GAACGTGGAT TGTTAAAATG TAAAACTCCA GTGGTAAGCT
  AAAATCAGGG ATCTGAGCAT AGTAGCGTAG CCTACAATT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss120007305	PARCsnp_1.17731	PARC_SEQ	INBRED	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs108341123					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172029352 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr15161	transcription start site region 15161	1283 bp upstream
Tssr15162	transcription start site region 15162	1230 bp upstream
Tssr15163	transcription start site region 15163	1196 bp upstream