rs108341149 SNP Detail

Summary

• ID
  rs108341149
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15078644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTGCAAGC AAAACTGAGG CATATGGCTC TGGCCTTCCT
  CATTTATTTT ATATTCCTTT GTGAATATTT TTATTTCCTG GGCAGCTTTA GAGTAATTAC
  G
  GTATATTACT CAGTATCTGG TCCACAGGAT CCTGAATGGA TGTGTGTTAC AGAGTACTAT
  ATGTTAGAAG TAAGAGAATT CATGACACCA TGGATGCAG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147915972	ENSMUSSNP795174	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs108341149					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15078644 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	1110 bp distal
Gm17019	predicted gene 17019	320 bp downstream
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	557 bp proximal
Rr121523	regulatory region 121523	309 bp distal
Rr121525	regulatory region 121525	656 bp proximal
Rr121527	regulatory region 121527	1472 bp proximal
Rr121528	regulatory region 121528	1947 bp proximal
Rr128307	regulatory region 128307	744 bp distal