rs108343725 SNP Detail

Summary

• ID
  rs108343725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:175792742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTG GGTGGCCCCT TTCTCCCTGT
  Y
  TCTCCATACC GTCTTTCCTC TATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146327499	ENSMUSSNP4260077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320153294	CHEV_1_177895307	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108343725					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:175792742 () rs orientation: forward

Symbol	Name	Function Class
Pld5	phospholipase D family member 5	Intron
Rr423867	regulatory region 423867	134 bp proximal
Rr423868	regulatory region 423868	1438 bp proximal