rs108344427 SNP Detail

Summary

• ID
  rs108344427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23733913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATCTTAG CCCTCTGTGG
  GATGTAGGGT TGGTAAATAT CTTTTCCCAA CTTATTGATT GCCAGTTTGT CCTTTGCCTT
  ACAGAAGCTT TGCAATTTTA TGAGGTCCCA TTTGTCAATT CTTGATCTTA GAGCATAAGC
  TATTGGAGTT CTATTCAGGA AAAATCCCCG TGTCCATGTG CTCAAGGTTC TTCCCCACTT
  W
  CTTTTCTATT AGTTTCAGTA TATCTGGTTT TATGTGGAGG TCCTTGATCC ACTTGGACTT
  GAGCTTTGTA TAAGTAGATA AGAATGGATC AATTTGCAAA CTAAATAAAT ATCTTTGTAA
  AGAGTCTCAC AAAAGGTATG CTCCAAGTTG AGGGGAAGTG TGGCAAGACA TGAAGAAAAG
  AGCATATACT GGAGACAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ
ss130667949	NCBIM37_NT_039649_chr17_23651906	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ
rs108344427					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130667949	NCBIM37_NT_039649_chr17_23651906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23733913 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	515 bp upstream
Rr329666	regulatory region 329666	488 bp proximal