rs108344899 SNP Detail

Summary

• ID
  rs108344899
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88373827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCTCTT ATCGCGGAGC
  CCCCTTCCTC CAACACCCTG TTTCCTCTCT CGGGTTTCCT CCTTCCCCGA CGGAGGAGGA
  GGAGGAGGAA AGAGGAAAGG GGGGAGTGTG GCAGGGCGGG TGATAATGGG GAGGTATCAG
  GGCATATAAT GGAGCCGGGG GTGGGCGAAG GAGCGGCAGT ACGTAGCGAA GGTTCTAGGA
  K
  AGGAGGTGCT CTGAAGGAAG GGCGGGGGCT GCTGATGCAA TTGGGAGAAG TGATTAATCC
  TGCCTTTTGC CGGTTCAGCC TCCCTCCACC CCAACCTTCA CCTGGTTCTC TTAAACGCCA
  CAAGGAGTGA GGGACTCCGT CTTGGGTAAC TCCGGATTTC TGGGCTCGGT AGGTTCAAGC
  TCTCAGCTGT AGGGAGCGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325500673	CHEV_17_88465739	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108344899					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88373827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	within coordinates
Fbxo11	F-box protein 11	1108 bp upstream
Rr333911	regulatory region 333911	1174 bp proximal
Rr333912	regulatory region 333912	1974 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	1864 bp proximal
Rr370332	regulatory region 370332	79 bp upstream
Rr405528	regulatory region 405528	within coordinates
Tssr146222	transcription start site region 146222	1598 bp downstream
Tssr146223	transcription start site region 146223	1570 bp downstream
Tssr149795	transcription start site region 149795	670 bp upstream
Tssr149796	transcription start site region 149796	568 bp upstream
Tssr149797	transcription start site region 149797	526 bp upstream
Tssr149798	transcription start site region 149798	406 bp upstream
Tssr149799	transcription start site region 149799	312 bp upstream