rs108345183 SNP Detail

Summary

• ID
  rs108345183
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46121476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCtatttat tttttaaaga tatatattaa
  agatacatat atcttaaata tattaatact taagatgttt aatatatatt aaatatattt
  aaaaataaGG TACTAACCtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  W
  gagagagaga gagagagaga gagagagaga gagagagaga gagaggaggg tcctcttatc
  actttctgat tattcctttg agacaaggtc tctacctaaa cttaaagggt catattttct
  agactaggct ggaaatcagc acacctagtc                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148968822	ENSMUSSNP6422512	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss324332930	CHEV_13_46063369	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108345183					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46121476 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	1492 bp downstream
Cpgi5536	CpG island 5536	1697 bp distal
Gm56575	predicted gene, 56575	1704 bp upstream
Rr478836	regulatory region 478836	1715 bp distal
Rr478837	regulatory region 478837	1758 bp distal
Rr478838	regulatory region 478838	1214 bp distal
Rr478839	regulatory region 478839	1228 bp distal
Rr478840	regulatory region 478840	1197 bp proximal
Tssr122341	transcription start site region 122341	1675 bp upstream