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rs108349078 SNP Detail
Summary
  • ID
    rs108349078
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:136390309 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCCAGGCT TTCTACTCCT
    AGAAGGGCTT TCTTTGCATT AGGTGTGTGT TTCCTCTTAT CCTGTCCACC ACTCTCCTGG
    TGGCTTGGGG GCCTCTGCCC TTACAGAGAA GAAGTTCGTA TTGGTCTGCG AAGACTTTCC
    CGAGTCCAGA CTCAGTTCCC TTTGAACAGA TGGGCTGTGT GCTCCATGGC TTTGCCCCTT
    Y
    TCAGTTTTGT TTGCAGCTCC TCTTGACCAA GTCCTGCATG TTCATGTTCT TATATCTCTG
    TGCTCAGCCC TCCAGGCTGT CTTGCTTCCT TCAAGTCATC GCTGATGACT GCTTGTAGAC
    GGATGACTAG CACATCTATA TTTACAATCT GTTCTTTCCC CCTCTGGAAG GATTTCTCAA
    GCCCTGCGAC AACGACAGTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
ss135937010 ENSMUSSNP2688614 ENSEMBL ENSEMBL_Sanger f SNP T T T C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
rs108349078 SNP T T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:136390309 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ppp3ca protein phosphatase 3, catalytic subunit, alpha isoform Intron
Noncoding-Transcript-Variant
Rr585842 regulatory region 585842 within coordinates
Tssr31878 transcription start site region 31878 338 bp upstream
Tssr35850 transcription start site region 35850 104 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory