rs108349660 SNP Detail

Summary

• ID
  rs108349660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57530102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTGGAGT GATGGGCAGG
  GACAAGACCA CCAGGTCCTG GCCAGGCTCC CGAACCTGGC GGCCTGCCTT CAGGAGCTTC
  CCCTTGTTCA TAACCTGGAG GGATGATGGG CTAGCATAAG AACCAGGACA GGGCTAGGTA
  GAATGGGTAC AGGAGACCCC AGGGCTGGGC ATGAATCCCT GGGGTACTGG AGGAGCTGAG
  R
  CCCCTGATGG TCACGGACCA GGTAGGTGTA GTATCGGATC TTGGCCTCAT GGCCTGGGTC
  TGTGCGCAGG TGGAAGTTGA CATTGAGGTT GTCCCCCGGC TTGAGCTCCA TTCGTGACAC
  TGACAAGTGT AGGTAGTTGT TGGAGTTGTG CATAGTGCTG TAGGGATGGG CCTCCATTGT
  CTTGGTGGCC TGCCGTGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573168	MGP_WTSI_17_57362525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108349660					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573168	MGP_WTSI_17_57362525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57530102 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	1220 bp proximal
Gm65552	predicted gene, 65552	1592 bp downstream
Tssr145377	transcription start site region 145377	871 bp downstream
Tssr145378	transcription start site region 145378	10 bp upstream
Tssr145379	transcription start site region 145379	91 bp upstream
Tssr145380	transcription start site region 145380	120 bp upstream
Tssr145381	transcription start site region 145381	186 bp upstream
Tssr145382	transcription start site region 145382	716 bp upstream
Tssr145383	transcription start site region 145383	832 bp upstream
Tssr145384	transcription start site region 145384	965 bp upstream
Tssr148938	transcription start site region 148938	1702 bp upstream
Tssr148939	transcription start site region 148939	1173 bp upstream
Tssr148940	transcription start site region 148940	829 bp upstream
Tssr148941	transcription start site region 148941	756 bp upstream
Tssr148942	transcription start site region 148942	256 bp upstream
Tssr148943	transcription start site region 148943	216 bp upstream
Tssr148944	transcription start site region 148944	202 bp upstream
Tssr148945	transcription start site region 148945	165 bp upstream
Tssr148946	transcription start site region 148946	153 bp upstream
Tssr148947	transcription start site region 148947	81 bp downstream
Tssr148948	transcription start site region 148948	133 bp downstream
Tssr148949	transcription start site region 148949	188 bp downstream
Tssr148950	transcription start site region 148950	753 bp downstream
Tssr148951	transcription start site region 148951	794 bp downstream
Tssr148952	transcription start site region 148952	835 bp downstream
Tssr148953	transcription start site region 148953	1019 bp downstream
Tssr148954	transcription start site region 148954	1070 bp downstream
Tssr148955	transcription start site region 148955	1217 bp downstream
Tssr148956	transcription start site region 148956	1250 bp downstream
Tssr148957	transcription start site region 148957	1778 bp downstream