rs108351863 SNP Detail

Summary

• ID
  rs108351863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32429647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGCCGC ACCCTGGAGG
  AGATCTGGAG GGCGGCCACC CCGACGCTGA CCAGCTTCCC GACCATCCGC GTCGGCGACG
  ACGTGTGGGG CGAGCGCAGC CTGGCGGTGG CGCGGCGCAG GGCGAGCCAA GTGCTGCGAG
  TGGACCTGGA CCCGGTGGTG AGGCTGCGCC GCTTCCCGGT GCACCGGCTG TGATGCGCGC
  Y
  GCGGCGCCTC CTGCCGGCCG CCGCCCGGGG AAGCTTCCGC GCGCTGGAAC GGACTTATGT
  CAATGTCAGT CGAATGTTTA CAGAACCGGC CCCCTTTGGT GCACTTTATG CGCGAACTAG
  GCCCCTGGAT GCGGTGCGGC GCCGCGGTCC AGGATCGGGA CAGGTGCGGC CCCCACGCCC
  GCGGCCAGAC GGGACGGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385510088	MGP_WTSI_12_33064513	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108351863					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385510088	MGP_WTSI_12_33064513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32429647 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	within coordinates
Cpgi4541	CpG island 4541	within coordinates
Rr403262	regulatory region 403262	888 bp downstream
Rr464758	regulatory region 464758	934 bp distal
Rr464759	regulatory region 464759	280 bp distal
Rr464760	regulatory region 464760	89 bp distal
Rr464761	regulatory region 464761	1 bp proximal
Rr464762	regulatory region 464762	1464 bp proximal
Tssr113128	transcription start site region 113128	941 bp downstream
Tssr113129	transcription start site region 113129	834 bp downstream
Tssr113130	transcription start site region 113130	753 bp downstream
Tssr113131	transcription start site region 113131	719 bp downstream
Tssr113132	transcription start site region 113132	547 bp downstream
Tssr113133	transcription start site region 113133	470 bp downstream
Tssr113134	transcription start site region 113134	414 bp downstream
Tssr113135	transcription start site region 113135	97 bp upstream
Tssr113136	transcription start site region 113136	257 bp upstream