rs108354007 SNP Detail

Summary

• ID
  rs108354007
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118374644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GAATTATCTA AAATTGCCTA TCTAATCTGC GGTTTATGCC
  CAGCCCTGAC AGTTACTTGT TCCTGTGATC TAAACACAGA CACACACACA GACACACACA
  G
  ACACACACAG ACACACACAC ACACACACAC ACACACACAC ACGCTGCAAG GATAAGAACA
  CAGTCCCACA GGTAGAGATT GTGTTCATTC CCCTGTCTTG T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147304414	ENSMUSSNP915643	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108354007					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118374644 () rs orientation: forward

Symbol	Name	Function Class
Bmf	BCL2 modifying factor	within coordinates
Cpgi12082	CpG island 12082	221 bp proximal
Rr397207	regulatory region 397207	1599 bp upstream
Rr563262	regulatory region 563262	819 bp distal
Tssr25777	transcription start site region 25777	999 bp downstream
Tssr25778	transcription start site region 25778	1147 bp downstream