rs108354854 SNP Detail

Summary

• ID
  rs108354854
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27837420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCACAGT GATTGAGGTT
  GCCACAAGAG GGCACTCTAG CATATCTGGA GATTAGTTGG AGAGGGATGC AGGATAAGAC
  ACTAGGGGAA TTCAAGAGGG ATAAAGGATG CTAGAGGGCG AGTAGGGGAC AGTTACAGAG
  AAGATTTTCC TAGAATAAAA TTTTCAAATC TAAAATTCAT GGGAAGGACT GGAATATCCA
  W
  AAAGGGGAAA ACGGATGTGG GCTCCTTCCT GACCCAGGGA ACCACAGAGG TTTGTCACGA
  AAGATAGTCT GTCAAGTTGC AAGATCAAAT TCAGTGATTA TTCTTTGGTT GTAACACTCC
  CATGACTCCC AATGCCCTCT GAAAAATATC AAAGACGACT AGCCAGGCGC CCATCCATTC
  AGTCAATAAA CCTGTCATAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148632155	ENSMUSSNP7230071	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108354854					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27837420 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	75 bp distal
Rr644171	regulatory region 644171	162 bp distal
Tssr65386	transcription start site region 65386	884 bp downstream
Tssr65387	transcription start site region 65387	551 bp downstream
Tssr65388	transcription start site region 65388	453 bp downstream
Tssr65389	transcription start site region 65389	399 bp downstream
Tssr65390	transcription start site region 65390	1727 bp upstream
Tssr65391	transcription start site region 65391	1758 bp upstream
Tssr65392	transcription start site region 65392	1780 bp upstream
Tssr65393	transcription start site region 65393	1918 bp upstream
Tssr65394	transcription start site region 65394	1967 bp upstream
Tssr71448	transcription start site region 71448	888 bp upstream
Tssr71449	transcription start site region 71449	875 bp upstream
Tssr71450	transcription start site region 71450	863 bp upstream
Tssr71451	transcription start site region 71451	456 bp upstream
Tssr71452	transcription start site region 71452	1771 bp downstream
Tssr71453	transcription start site region 71453	1794 bp downstream
Tssr71454	transcription start site region 71454	1821 bp downstream