rs108363387 SNP Detail

Summary

• ID
  rs108363387
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48770077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGGATT TCTCTGTGTA
  GTCCTGGCTG TCCAGGAACT CACTTTGTAG CCAGGCTGGC CTCGAACTCA GAAATCCACC
  TGCCTCTGCC TCCCAAGTGC TGGGATTAAA GGCGTGCGCC ACCACGCCCG GTCAGGCCTT
  TTTCTTAAAG CTTGAGCTGC TGGCGCTGTT TCTGGAATCC TCCGTGTGGC TGTGGACAGG
  T
  ACATTTCTGG GGGTATTCTG CTGAAGGGAG GCTGAGGGGC CATGCGTGTG CGCGCGTGTG
  TGTGCGTGTG TAGTAGTAGT AGTAGTAGTA GTAGTAGTAG TAGTAGTAGT AGTAGAATAG
  TAGTAGTAGT ATAATAATTT ATATATAATA TACTTTGTAC TAGTAGTATA GTCATAGAAA
  CAACCATTTT GAGGTGCCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145717381	ENSMUSSNP5233507	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108363387					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48770077 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			715 bp downstream
Rr528303	regulatory region 528303			1353 bp distal
Tssr145120	transcription start site region 145120			640 bp downstream
Unc5cl	unc-5 family C-terminal like			Intron
				Noncoding-Transcript-Variant