rs108363909 SNP Detail

Summary

• ID
  rs108363909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:79922585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGGTTAA AAGTTGTGCC
  GTGGGGGTGG AGGTGAGCTA AGGGCGGGGA GGCCTTGGAA GCCATCGGTG GCAGGGATGG
  CCCAGTGGAT GCGCCGGGTG GAGGGGGGCA GTTGCCTCCG AGGCGGCCTG CGGGGCGCTC
  TGCGGGGCTC AGCTTTCCGG GTCGAGAGAA GCAGGCCCGG AGCCCGGGGC TGAGCAGTGC
  Y
  GGCGGCCGGA GGAGGCGGGA GCCCCGGGCC GCTAGCGGCT CCTCCCCCGG CGCCTCCGTT
  ATCTGGGTCA GACACGAAGG CCACCACGCA GGACCTTGGG ACCCGCAGGC TGCACAGGGT
  TCCACTCGGC CATCCTCTCC TGGCTCGCCC GCTCGCCCGC GGGTCCCGGT TCCCTGGCTC
  CAGCCCCAGA GAAGCCTGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss399162019	MGP_WTSI_17_80014496	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs108363909					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	C	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399162019	MGP_WTSI_17_80014496	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:79922585 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9519	CpG island 9519	within coordinates
Gm56916	predicted gene, 56916	352 bp upstream
Rmdn2	regulator of microtubule dynamics 2	within coordinates
Rr392984	regulatory region 392984	within coordinates
Rr531314	regulatory region 531314	within coordinates
Rr531315	regulatory region 531315	363 bp proximal
Tssr145919	transcription start site region 145919	113 bp downstream
Tssr145920	transcription start site region 145920	85 bp downstream
Tssr145921	transcription start site region 145921	36 bp upstream
Tssr145922	transcription start site region 145922	52 bp upstream
Tssr145923	transcription start site region 145923	80 bp upstream
Tssr145924	transcription start site region 145924	99 bp upstream
Tssr145925	transcription start site region 145925	360 bp upstream
Tssr145926	transcription start site region 145926	1706 bp upstream
Tssr149447	transcription start site region 149447	290 bp downstream