rs108367896 SNP Detail

Summary

• ID
  rs108367896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57403109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGTGG ACGAAGGAGT
  AAAGTAGTCT CTGAGGAAGG TCCGATGGGA AACAAGCTTT CTTTCCTAGG CTGTTAGAGT
  CCGGTGGAAT AGGGAGAACA GCGGGGGATG TGGGAAGGAC CAGGGCGGGC TCTGGGAGGC
  TGATAGAGAA GTCTGTTAAG CCTACCCGGT AGGGCCTGAG CAGGGGGGGG GGGGGGGGCG
  R
  AGGGGGGTCT TTGGAGATTG GCAGGGAAGC AGGCGAGGCA AGAGAACTGA ACCGCCTGGG
  AAGCTAAGGG AGCGGGAAGT AGGCTGGAAG AATGACGTCA AAAGTGGGAA TCCACAACCT
  CGAGGAAGCT GTTGACTGGG GAAAGTGGGC AGGGCGTAGA GAGAATGACA GAGCAGCTGG
  GAGGGGCTAA GAAAGTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss130939550	NCBIM37_NT_039649_chr17_57235532	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	A	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs108367896					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G	A	G	G	G	A	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130939550	NCBIM37_NT_039649_chr17_57235532	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57403109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9395	CpG island 9395	478 bp proximal
Gm11110	predicted gene 11110	within coordinates
Gm46589	predicted gene, 46589	619 bp upstream
Gm56907	predicted gene, 56907	within coordinates
Rr529273	regulatory region 529273	1575 bp distal
Rr529274	regulatory region 529274	within coordinates
Rr529275	regulatory region 529275	637 bp proximal