rs108368223 SNP Detail

Summary

• ID
  rs108368223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57531638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGAAA AGGTCCCCAA
  GATAAAGGAG GCTAAGAAGG GGAGGAGCTC AGAATGGGTG GCCTGGTTCA GCAAGGTGAG
  TGACTGGTAG GGGCACTAAG AGGTGGGATG GGCTCTGGAG TGATGATGGG GCGTGGTCGG
  GGGGCGGGGG AGGGAGCAGG GAGAGGCTGC CATTCTAAGC TCTCATTCCA AGGGGTGAGA
  M
  AGTACCACTA CGCGCGTGAG GGAGTGGGCC AGAGAAATCT TCTTATCGCC ATCCTGGACC
  CCAAAAATCA CGAAGGCTGT CCCGTCCACG TTTTTCCCGT ACAGGAACCT GAGAGACAAG
  GAGACTTGGG GTCCTGGAGA CTTCTCTGGG TGTGGCTGAA GACACGCCCC CCATGCGTCA
  ACGCCCCCCC CCCATGCGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398573198	MGP_WTSI_17_57364061	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	A	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108368223					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398573198	MGP_WTSI_17_57364061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57531638 () rs orientation: forward

Symbol	Name	Function Class
C3	complement component 3	within coordinates
Cpgi9399	CpG island 9399	within coordinates
Tssr145378	transcription start site region 145378	1503 bp downstream
Tssr145379	transcription start site region 145379	1428 bp downstream
Tssr145380	transcription start site region 145380	1383 bp downstream
Tssr145381	transcription start site region 145381	1329 bp downstream
Tssr145382	transcription start site region 145382	775 bp downstream
Tssr145383	transcription start site region 145383	698 bp downstream
Tssr145384	transcription start site region 145384	528 bp downstream
Tssr145385	transcription start site region 145385	611 bp upstream
Tssr145386	transcription start site region 145386	1387 bp upstream
Tssr145387	transcription start site region 145387	1618 bp upstream
Tssr148942	transcription start site region 148942	1792 bp upstream
Tssr148943	transcription start site region 148943	1752 bp upstream
Tssr148944	transcription start site region 148944	1738 bp upstream
Tssr148945	transcription start site region 148945	1701 bp upstream
Tssr148946	transcription start site region 148946	1689 bp upstream
Tssr148947	transcription start site region 148947	1439 bp upstream
Tssr148948	transcription start site region 148948	1355 bp upstream
Tssr148949	transcription start site region 148949	1299 bp upstream
Tssr148950	transcription start site region 148950	745 bp upstream
Tssr148951	transcription start site region 148951	716 bp upstream
Tssr148952	transcription start site region 148952	656 bp upstream
Tssr148953	transcription start site region 148953	475 bp upstream
Tssr148954	transcription start site region 148954	450 bp upstream
Tssr148955	transcription start site region 148955	305 bp upstream
Tssr148956	transcription start site region 148956	272 bp upstream
Tssr148957	transcription start site region 148957	242 bp downstream
Tssr148958	transcription start site region 148958	465 bp downstream
Tssr148959	transcription start site region 148959	625 bp downstream
Tssr148960	transcription start site region 148960	1379 bp downstream
Tssr148961	transcription start site region 148961	1416 bp downstream
Tssr148962	transcription start site region 148962	1562 bp downstream
Tssr148963	transcription start site region 148963	1614 bp downstream
Tssr148964	transcription start site region 148964	1647 bp downstream