rs108369053 SNP Detail

Summary

• ID
  rs108369053
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:171019514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCA CTAAAATAGC TTGATATTTC
  W
  CTTTAAGGTT ATCCTGGCAA AAGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss119997589	PARCsnp_1.01063	PARC_SEQ	INBRED	f	SNP	A	T
ss320117005	CHEV_1_173122076	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108369053					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171019514 () rs orientation: forward

Symbol	Name	Function Class
Gm70111	predicted gene, 70111	1058 bp downstream
Pcp4l1	Purkinje cell protein 4-like 1	Intron
Rr423237	regulatory region 423237	1860 bp distal
Rr423238	regulatory region 423238	1599 bp distal