rs108374714 SNP Detail

Summary

• ID
  rs108374714
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40156471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCGCGCAAT GGCGCCGCCC GAGTTCACGG TGGGTTCGTC
  CTCCGCCTCC GCTTCTCGCC GGGGGCTGGC CGCTGTCCGG TCTCTCCTGC CCGACCCCCG
  T
  TGGCGTGGTC TTCTCTCGCC GGCTTCGCGG ACTCCTGGCT TCGCCCGGAG GGTCAGGGGG
  CTTCCCGGTT CCCCGACGTT GCGCCTCGCT GCTGTGTGC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325385446	CHEV_17_39982525	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108374714					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40156471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	within coordinates
Rn18s-rs5	18s RNA, related sequence 5	774 bp upstream
Rr331227	regulatory region 331227	1871 bp distal
Rr331228	regulatory region 331228	871 bp distal
Rr331229	regulatory region 331229	within coordinates
Rr339832	regulatory region 339832	within coordinates
Tssr144602	transcription start site region 144602	767 bp upstream
Tssr144603	transcription start site region 144603	872 bp upstream
Tssr144604	transcription start site region 144604	930 bp upstream
Tssr144605	transcription start site region 144605	980 bp upstream
Tssr144606	transcription start site region 144606	1038 bp upstream
Tssr144607	transcription start site region 144607	1147 bp upstream
Tssr144608	transcription start site region 144608	1294 bp upstream
Tssr144609	transcription start site region 144609	1438 bp upstream
Tssr144610	transcription start site region 144610	1597 bp upstream
Tssr144611	transcription start site region 144611	1734 bp upstream
Tssr144612	transcription start site region 144612	1863 bp upstream
Tssr144613	transcription start site region 144613	1982 bp upstream
Tssr148053	transcription start site region 148053	1931 bp upstream
Tssr148054	transcription start site region 148054	1419 bp upstream
Tssr148055	transcription start site region 148055	1170 bp upstream
Tssr148056	transcription start site region 148056	822 bp upstream
Tssr148057	transcription start site region 148057	430 bp upstream
Tssr148058	transcription start site region 148058	163 bp downstream
Tssr148059	transcription start site region 148059	198 bp downstream
Tssr148060	transcription start site region 148060	319 bp downstream
Tssr148061	transcription start site region 148061	428 bp downstream
Tssr148062	transcription start site region 148062	943 bp downstream
Tssr148063	transcription start site region 148063	1074 bp downstream
Tssr148064	transcription start site region 148064	1316 bp downstream