rs108376783 SNP Detail

Summary

• ID
  rs108376783
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44054126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATATA TATATATATA
  TATGGTTTTG TCTGTAAATT TGCAAATTTT TCCTTTTATA TGTGTGTTAG AAAAATAAAG
  TGTTATTGTT CCAAAAGCAT GATGCTGTGT TCCATTCATT ATGAAGGGAC AGACCTGGGG
  CTTCCAAAAC TATAGGTGTT TTCAGAGAGG GACAGGCTCC CAGAAGTCTG CCCTTACCTC
  Y
  AGAGTATCCA TAGCTGGCAG CATGCTACTA AATGCTAGCT AGCGTCTCTG CCCCCTCCTG
  TGTGCCCTAT TCACCTGCAT CACTGCGATC GGTCCCAAAG CTACCCTGTG TAATTCCCCC
  TAACCCCAAG TGAACCAGAA CTCAAGTGTG CTACAACAAA AGAAATTTTA TTTAAAAATA
  CTTTTTTTTT ACAGACACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136391613	ENSMUSSNP1096138	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108376783					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44054126 () rs orientation: forward

Symbol	Name	Function Class
Cbl	Casitas B-lineage lymphoma	147 bp downstream
Mcam	melanoma cell adhesion molecule	102 bp downstream
Rr383290	regulatory region 383290	1476 bp downstream
Rr677565	regulatory region 677565	1292 bp proximal
Rr677566	regulatory region 677566	1619 bp proximal
Rr677567	regulatory region 677567	1712 bp proximal
Tssr89112	transcription start site region 89112	1698 bp downstream
Tssr89113	transcription start site region 89113	1884 bp downstream