rs108377787 SNP Detail

Summary

• ID
  rs108377787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43814301 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGTGCC ATTTCAGTAA
  AGATCCTACC AATGTTTTCC AGTGGAGTAT TACAGACTAT TTTCAAAATT TACACACAAA
  GGCATAAATT TGCAAGAATA AATAAGAAAC TGTCTAAAAG AAAGTTTTTT AAAAAAACAA
  AAACCAAGAA TCACTATAAC AGAAATACCA AGAACCTTCT TAAGAAAAAA CAATACAAAA
  Y
  AAAACAAAGC AGGGAAAGGG TTAGGGTTAT GATAATTAGC AAATATAATT ATCGAAGATA
  TCGGGGTTTG GAATGGAATA GAATGTCAAA AGAAACTCAT GTGTATGTGG GGCTTTGTTA
  CACAGGAAGA ATCAAAAGTG CTATAAGGAA ACTTTGCTCT CTTTAATAAC ATTAAAAATT
  GTGTTCAGAA AATCGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398250214	MGP_WTSI_17_43640359	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108377787					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398250214	MGP_WTSI_17_43640359	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43814301 () rs orientation: forward

Symbol	Name	Function Class
Mep1a	meprin 1 alpha	598 bp upstream
Rr339847	regulatory region 339847	1900 bp distal
Rr339848	regulatory region 339848	1100 bp distal
Rr339849	regulatory region 339849	700 bp distal
Tssr148121	transcription start site region 148121	671 bp upstream
Tssr148122	transcription start site region 148122	604 bp upstream
Tssr148123	transcription start site region 148123	603 bp downstream
Tssr148124	transcription start site region 148124	857 bp downstream
Tssr148125	transcription start site region 148125	868 bp downstream
Tssr148126	transcription start site region 148126	918 bp downstream