rs108377797 SNP Detail

Summary

• ID
  rs108377797
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28040678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATT CTAAGGAGGA ATGAAGTATC
  M
  ACACGTTGGT CTTCCTTCTT CTTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134709372	ENSMUSSNP30728	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320689854	CHEV_3_27885451	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108377797					SNP	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28040678 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574518	regulatory region 574518	1691 bp distal
Rr574519	regulatory region 574519	634 bp distal
Rr574520	regulatory region 574520	1331 bp proximal
Tssr28639	transcription start site region 28639	1890 bp downstream