rs108378881 SNP Detail

Summary

• ID
  rs108378881
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:166230187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCTACCTC TGCCTCCCAA GTGCTGGGAT TAAAGGCATG
  TGCCATCACT GCCCCGCTCC CTAATTGGTT CTTGATTGTG TCAATAAAAA AGGCAGAAGC
  T
  AACTGTTGGG TGAAGGGAAA AAGGTGGGAC ATCTGGGTTG CAGGAGCAAG TGAAGGGGAT
  GCAGAGAGAA AGAGGATTTG GACCAGAGTG GATGGAGAT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146018979	ENSMUSSNP3081815	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108378881					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166230187 () rs orientation: forward

Symbol	Name	Function Class
Pogk	pogo transposable element with KRAB domain	Intron
Rr422579	regulatory region 422579	914 bp distal
Rr422580	regulatory region 422580	246 bp distal