rs108379162 SNP Detail

Summary

• ID
  rs108379162
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:77726057 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      G GGGAATTTAG CCTTCACAGG ACCAAAGGCC TCTCCTCCCA
  CTGATGCCAG ACAATGCCAT CCTCTGCTAC ATATGCAGTT GAAGCCATGG GTACTCTTTG
  K
  TTGGTGGTTT AGTCCCTGGG AGCTCTGGAG GGTCTGGTTG GTTGATAATA TTGTTCTTCC
  TATGTAGTTG CAAACCCCCT CAGCTCCTTT AGTCCTTCCT C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135082600	ENSMUSSNP3982168	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108379162					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:77726057 () rs orientation: reverse

Symbol	Name	Function Class
Gm53379	predicted gene, 53379	within coordinates
Tssr67298	transcription start site region 67298	1308 bp upstream