rs108379403 SNP Detail

Summary

• ID
  rs108379403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90981621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA GGGCAGCTCC TGCCTACCAT
  M
  AGGTGGTTGG CTGAGTGTAA GGTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144937869	ENSMUSSNP3678846	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108379403					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90981621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi568	CpG island 568	171 bp distal
Lrrfip1	leucine rich repeat (in FLII) interacting protein 1	within coordinates
Rr29813	regulatory region 29813	within coordinates
Rr396168	regulatory region 396168	837 bp downstream
Tssr8032	transcription start site region 8032	707 bp downstream
Tssr8033	transcription start site region 8033	379 bp downstream
Tssr8034	transcription start site region 8034	367 bp downstream
Tssr8035	transcription start site region 8035	349 bp downstream
Tssr8036	transcription start site region 8036	337 bp downstream
Tssr8037	transcription start site region 8037	74 bp upstream
Tssr12924	transcription start site region 12924	1071 bp upstream
Tssr12925	transcription start site region 12925	1053 bp upstream
Tssr12926	transcription start site region 12926	1027 bp upstream
Tssr12927	transcription start site region 12927	1001 bp upstream
Tssr12928	transcription start site region 12928	851 bp upstream
Tssr12929	transcription start site region 12929	49 bp upstream