rs108381182 SNP Detail

Summary

• ID
  rs108381182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6885638 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T TTACTGAAGG ATACTGCAGG GATCAAAGAC TGCCAGGGTG
  CTGGGAACAG CTGTCCTGCC CCTCCCCGCG ATGAGGAAAC AACCAGACTG AGGGTTGTTC
  Y
  ACAGCAGGGG CTGAACCCTG CTCTTTGACC TGCAGTCGCA ATCTCGATGC TGTGACCATG
  AGAGAGCGGC TCTGCTTCAG AGAGATCAGG AAAGGTGTAG A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145090380	ENSMUSSNP3540249	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss145092791	ENSMUSSNP5853872	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108381182					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6885638 () rs orientation: reverse

Symbol	Name	Function Class
Gm64560	predicted gene, 64560	within coordinates
Rr521400	regulatory region 521400	717 bp distal
Rr521401	regulatory region 521401	within coordinates
Rr521402	regulatory region 521402	1940 bp proximal
Tmem181c-ps	transmembrane protein 181C, pseudogene	within coordinates