rs108382651 SNP Detail

Summary

• ID
  rs108382651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:57275961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTCATT TTTTTCTTTT
  TTGTTTTTTT GAGACAGTTT CTCTGTAGCC CTGGCTGTCC TGGAACTCAC TTTGTAGACC
  AGGCTGGCCT TGAGCCCAGA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG GATTAAAGGT
  GTGTGCCACC ACTGCCCTGC TAGGGCTCAT TGTTTAGAAG TTAGTGTGGC CTCTTTTTTG
  R
  AAACTTTTGC TATGTATCCC AGGCTGTCCT GGAATTCACG TTCACTCTTC AAAGGTTCAG
  AATTACAGAT GTGTACCACC ATAATCATAT TTTTTTAGTG GTGGTTTGTT TACATAAAAA
  TATGATTCAA CTCCGACTAA TGTAAAGTAA TAAATAAAAT TTAAAAATGC ATTTAAAGCC
  TGAATCTGTC ACAAGTCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss137780773	ENSMUSSNP2613195	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108382651					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:57275961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4649	CpG island 4649	874 bp proximal
Gm40426	predicted gene, 40426	1533 bp downstream
Mipol1	mirror-image polydactyly 1	1252 bp upstream
Prps1l3	phosphoribosyl pyrophosphate synthetase 1-like 3	1237 bp upstream
Rr403305	regulatory region 403305	1202 bp upstream
Tg(H2-K1-Ifnb1)10Seif	transgene insertion 10, Isabelle Seif	within coordinates
Tssr113518	transcription start site region 113518	1293 bp downstream
Tssr113519	transcription start site region 113519	1231 bp upstream
Tssr113520	transcription start site region 113520	1290 bp upstream
Tssr113521	transcription start site region 113521	1339 bp upstream