rs108384186 SNP Detail

Summary

• ID
  rs108384186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88188642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G ATTTCTCTTG CTGCTGCCGC TGCTGCCGCT GCCATCACCA
  CTCTTGATTC CTTCGCTTGC TACGCCCACT CCAGTGAAGT CCACTTGACA GGCCAAGAGG
  Y
  CTGGAAGCAC TCACAAGGCA AAGAGTTTCA AGGAAACAAT GCCTCCTGGA ACTTTGGCAT
  TCCCATAGCC CGTATACTCA AAACCTGTCC CTGTGTTAGT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135470169	ENSMUSSNP1936790	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108384186					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88188642 () rs orientation: forward

Symbol	Name	Function Class
Gm38392	predicted gene, 38392	within coordinates
Rr375311	regulatory region 375311	within coordinates
Rr579701	regulatory region 579701	within coordinates
Tsacc	TSSK6 activating co-chaperone	1422 bp downstream
Tssr931	transcription start site region 931	702 bp upstream
Tssr33995	transcription start site region 33995	49 bp upstream