rs108384357 SNP Detail

Summary

• ID
  rs108384357
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:33858827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCCGAGG TCACCCTTAA GGAGCATTAT CATAAAGACA
  CAGAGGAGGA AGAGGAGAGA CCCATGCATT GAGTGGTATG CATTACAGAC AGGACAGAGG
  S
  GGGGTGGGGG GACCACTGCT GAGTCATTCA GGGACTGTTT GCTTTCCTCA GAGATGAACT
  CGCTGAGAGA TTGGGAGCAG ACACTTTATA GGCCTCCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145493390	ENSMUSSNP4385671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108384357					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:33858827 () rs orientation: forward

Symbol	Name	Function Class
Gm20507	predicted gene 20507	within coordinates
Pram1	PML-RAR alpha-regulated adaptor molecule 1	within coordinates
Rr392542	regulatory region 392542	within coordinates
Tssr143787	transcription start site region 143787	1743 bp downstream
Tssr143788	transcription start site region 143788	1730 bp downstream
Tssr143789	transcription start site region 143789	1712 bp downstream
Tssr143790	transcription start site region 143790	1346 bp upstream
Tssr147440	transcription start site region 147440	58 bp downstream