rs108384845 SNP Detail

Summary

• ID
  rs108384845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28397779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCCTGA GGTAACAGGT
  GCAGAACATT CAGGACCCTT CTGCCTCACA GGAAACCTTT ACCTTTATGG TAGAACAGTT
  GTTTTTAGTG AAGGTCTAAC TACTGGGTGC TGGAGATGCC ACAGACACCA AGCATATGGC
  CCACGCCAGT CACTACTGCT GCCATCTTGG AATCCCTGTC CCCATCTCTG ATGAGTGCCT
  Y
  ACCTCTCACT TGGACCTTTT TCACAGCCCC TTAGTAATGA TCCCCCTGCC CCAGAAACTA
  CTGTATGGCA AACTTTATTT ATATAGATTA ACTAGACCTC TCACAGGCCA GACCTATTAG
  CTCTTTCTGT CACCACTCCC TCCCTGCCTT TTCCTGAGAG TTGCTTTAAA TAAAGGAATC
  TGGAATTGAT ACATTTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352124	CHEV_17_28315750	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs108384845					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28397779 () rs orientation: forward

Symbol	Name	Function Class
C230013L11Rik	RIKEN cDNA C230013L11 gene	1123 bp upstream
Cpgi8870	CpG island 8870	853 bp distal
Rr339474	regulatory region 339474	378 bp distal
Rr339475	regulatory region 339475	1021 bp proximal
Tssr143392	transcription start site region 143392	1591 bp downstream
Tssr143393	transcription start site region 143393	1356 bp downstream
Tssr147097	transcription start site region 147097	1123 bp upstream
Zfp523	zinc finger protein 523	within coordinates