rs108386489 SNP Detail

Summary

• ID
  rs108386489
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:11502776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agttaacag ttcagttata tggtagaaaa
  gaagtatcta aaagtctgtt ttatcaaatg gaactacaac actcatagga aatttagata
  ggtaggtaga cagacagaca gacagacaga ctgactgact cactgactga ctgactgact
  S
  actgactgac tgactgatat gggacagcca tatatttaca ggccaaaaga aaaaaataaa
  gaaggatggt caactggaac tacaaccgat actacatgta aaaattaaat atacaggctt
  agatatatga gctaaaccta ctaaagcaga                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148674839	ENSMUSSNP5953675	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss324264574	CHEV_13_11580157	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108386489					SNP	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:11502776 () rs orientation: forward

Symbol	Name	Function Class
D13Ertd463e	DNA segment, Chr 13, ERATO Doi 463, expressed	11 bp proximal
Rr387978	regulatory region 387978	1895 bp upstream