rs108387726 SNP Detail

Summary

• ID
  rs108387726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAACCGA CAGGAACCTC
  GCCACGAGGG CACTGAAGCC AGGTCGTCCC CGCCCTGCTC TTCTGCTCCT ACCAACTCCT
  TCCCCCTTTG CCAGCTTCCG CGCGGAACCC TTTTTCGCAT TTCCGTGCAG TTGAAACCCG
  GGACCCACTT CGTCAGCACA ATCCGGAACA GTCAACATGG CGGCGGCCGT AAGGTGCCTC
  Y
  GTAGAGGTAA GAGGAGCAGT GTTCTTGCGT GGAAAGTAAA TCTAGAGCCA AGTTTCCTGT
  TGCAGCGGAA TCCATGGCAG AATCTCGTAG GCACCGGTCA GCTTCTCGGT CCTCGAAATG
  CTTCCGTGAT CTTCTGGGCT CCACAGCCCA GAGGGTCATC AGTGCTTAAA AGCGACACTT
  AACGCAAGGG TTCTCTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148870828	ENSMUSSNP5433723	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs108387726					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	within coordinates
Gm72185	predicted gene, 72185	119 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	within coordinates
Rr614892	regulatory region 614892	1276 bp distal
Rr614893	regulatory region 614893	684 bp distal
Rr614894	regulatory region 614894	146 bp distal
Rr614895	regulatory region 614895	33 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	699 bp downstream
Tssr47396	transcription start site region 47396	424 bp downstream
Tssr47397	transcription start site region 47397	26 bp downstream
Tssr51962	transcription start site region 51962	161 bp upstream