rs108388459 SNP Detail

Summary

• ID
  rs108388459
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185320348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGATGGCA TTCCCACATG
  AGCCCATGAC CTTGGCACAC AGGGCCATCT TCCCAAGTTC TCAGATTGCT CCACTGACTC
  CGCACAGCTG GCTCGTGAAT ATGGGCCAGG CAGAGCCTAG GACATGGATG GCCCAGCCCC
  AGCCCTGCAG AGTTCTCCTC CGAGGACAAC CCTGTGTTAC AAGCCACTCG TGAGTCTCTG
  R
  AACTGTTCAT GAAAGCTGGC AGCGCTTCAC TTGAAGACTT TGTGTTTATC TTGAAGTAAT
  TTATGAGTGA CTGTGGAGTT TGCATTGTTA GAAAAATTGA TTGTTGATAG CGTCCCAGCC
  TACTTGATAA ATGCTTCTTT GCTTCAGTCT GTTGGAATGT GACGTCAATG CTGTGTGACT
  GAAGGGCCGG GCTACAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146437009	ENSMUSSNP5981883	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss320177565	CHEV_1_187412030	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108388459					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185320348 () rs orientation: forward

Symbol	Name	Function Class
Rr425415	regulatory region 425415	within coordinates