rs108390761 SNP Detail

Summary

• ID
  rs108390761
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26841601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAGGAGC CATTCCCAGG
  GCTCCCTGTG TGTAGGACCC AAGGGACCTA ACTGATCTGG GTTATATCAT TTGTTTTATA
  GCTTTTTAAA GGAGAACGTT TATCTTTTGT TTGTTTGTTT GTGGGAAAAT ATTTTTTCTT
  TTTTTATTAG ATATTTTCTT TATATACATA CGTTTATCAT TTTAAAGTGT GTGTGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTT CTCATTTGTA GAGGCAGAAG
  AGGGCATTGG TTCTAGAGCT GGGGTTGCAG ACGTTGTGAG CTGCCTAATT TGGGTTCTCC
  CTAAATTTGA GTCCCTAAAA GAGCACTAAG TGCTCTTAAC CATTGAGCCA TCTCTTCAAT
  CTCATGTTGT TTCATTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
ss130694216	NCBIM37_NT_039649_chr17_26759572	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	WSB/EiJ	ZALENDE/EiJ
rs108390761					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss130694216	NCBIM37_NT_039649_chr17_26759572	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26841601 () rs orientation: forward

Symbol	Name	Function Class
Ergic1	endoplasmic reticulum-golgi intermediate compartment 1	Intron
Gm17218	predicted gene 17218	within coordinates
Rr523903	regulatory region 523903	1168 bp distal
Rr523904	regulatory region 523904	446 bp distal
Tssr143257	transcription start site region 143257	1106 bp downstream
Tssr143258	transcription start site region 143258	1551 bp upstream
Tssr143259	transcription start site region 143259	1571 bp upstream