rs108391990 SNP Detail

Summary

• ID
  rs108391990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:5641878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TCGTGGAGGT AGTGATACAA
  R
  AATACAATTG TCTCCAATGC CCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134543001	ENSMUSSNP4529367	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320638400	CHEV_3_5576818	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs108391990					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5641878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12950	CpG island 12950	54 bp distal
Gm6146	predicted gene 6146	within coordinates
Pex2	peroxisomal biogenesis factor 2	mRNA-UTR
Rr573198	regulatory region 573198	701 bp distal
Rr573199	regulatory region 573199	89 bp distal
Rr573200	regulatory region 573200	424 bp distal
Rr573201	regulatory region 573201	295 bp distal
Tssr28281	transcription start site region 28281	905 bp downstream
Tssr32526	transcription start site region 32526	708 bp upstream
Tssr32527	transcription start site region 32527	656 bp upstream
Tssr32528	transcription start site region 32528	635 bp upstream
Tssr32529	transcription start site region 32529	587 bp upstream
Tssr32530	transcription start site region 32530	574 bp upstream