rs108392870 SNP Detail

Summary

• ID
  rs108392870
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56257943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTCCAT GGCTTCCCAC
  AGCCAGACAC TCACCCAGTA GCATGGAGAG CGCACAGCAG TCTCCTGAGT CCTCCCGCCC
  AGAGCCCCGG AGCTCTGGTG GGATGTGGGT CATCTCTCCC ACCCCTTTAG TTCCCCACAT
  CTGGCGCTCA AAAGTCCTGC CAAAGCCAGA TTTGAAGAAG AGGATGACCT GTGTGGCCAG
  R
  TTACAGCCTT GCAGCAGGGA ATAGAGCCAC TGCCTTTGTC AGGCAAGTGA TGGGAGCCAC
  AGACAGACCA GTGGGGGTAC AGACAGAATC CAGGCTGCTC AGAGCACCTC AGGCACACAT
  CCCTGACTTA GCCATTACTC AGGTACAGAG GGTATATCTC ACTATGGAAG GGTCTCTCTT
  CCTGTTCCCT TTCTCCCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398548925	MGP_WTSI_17_56090366	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108392870					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398548925	MGP_WTSI_17_56090366	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56257943 () rs orientation: forward

Symbol	Name	Function Class
Ebi3	Epstein-Barr virus induced gene 3	1697 bp upstream
Rr340009	regulatory region 340009	1857 bp proximal
Rr342199	regulatory region 342199	within coordinates
Tssr145247	transcription start site region 145247	1685 bp upstream
Tssr145248	transcription start site region 145248	1773 bp upstream
Tssr145249	transcription start site region 145249	1785 bp upstream
Tssr145250	transcription start site region 145250	1801 bp upstream
Tssr145251	transcription start site region 145251	1836 bp upstream
Tssr145252	transcription start site region 145252	1848 bp upstream
Tssr145253	transcription start site region 145253	1855 bp upstream
Tssr145254	transcription start site region 145254	1878 bp upstream
Tssr145255	transcription start site region 145255	1908 bp upstream
Zfp119b	zinc finger protein 119b	1443 bp upstream